Blackberry Lime Cheesecake Cupcakes Recipe
If you’re searching for a delightful treat that marries creamy indulgence with a vibrant burst of fresh fruit, these Blackberry Lime Cheesecake Cupcakes will quickly become your new favorite dessert. Imagine a rich, tangy cheesecake nestled inside a buttery graham cracker crust, perfectly accented by swirls of sweet blackberry compote and zesty lime. These cupcakes are not only visually stunning but also deliver a harmonious balance of flavors that dance on your tongue—making them a crowd-pleaser for any occasion or a special night in.

Ingredients You’ll Need
These ingredients may be simple, but each one plays a starring role in the unforgettable taste and texture of your Blackberry Lime Cheesecake Cupcakes. From the buttery crust to the fresh lime zest and luscious blackberries, every item contributes to the balance of sweet, tart, creamy, and crunchy elements.
- Graham cracker crumbs: Provide a crispy, buttery base that holds together perfectly.
- Granulated sugar: Sweetens both the crust and filling without overpowering the fruit flavors.
- Unsalted butter: Binds the crust ingredients and adds rich depth.
- Cream cheese: Offers the creamy, smooth texture essential for cheesecake.
- Eggs: Help set the cheesy filling with a delicate, custard-like firmness.
- Lime zest and juice: Add a refreshing, citrusy brightness that cuts through the richness.
- Vanilla extract: Enhances the overall flavor with a warm, subtle sweetness.
- Sour cream: Keeps the cheesecake moist and silky with a slight tang.
- Fresh or frozen blackberries: Provide juicy bursts of tartness that swirl beautifully into each cupcake.
- Lemon juice: Brightens the blackberry mixture and helps balance the fruit’s natural sweetness.
- Optional garnishes: Whipped cream, extra lime zest, and fresh blackberries to elevate the presentation.
How to Make Blackberry Lime Cheesecake Cupcakes
Step 1: Prepare the Crust
Begin by preheating your oven to 325°F (160°C), ensuring a perfect baking temperature. Line a 12-cup muffin tin with cupcake liners to keep everything tidy. In a small bowl, mix graham cracker crumbs, sugar, and melted butter until the mixture feels like wet sand. Press about one tablespoon firmly into the bottom of each liner; this helps the crust hold together after baking. Bake for 5 minutes to set the crust, then let it cool while you move on to the next steps.
Step 2: Make the Blackberry Swirl
This vibrant swirl is what makes the Blackberry Lime Cheesecake Cupcakes truly pop with flavor and color. On medium heat, combine blackberries, sugar, and lemon juice in a small saucepan. Cook for roughly 5 to 7 minutes, stirring occasionally until the berries break down and the sauce thickens slightly. For a smooth texture without seeds, strain the mixture through a fine sieve. Allow it to cool completely before using it in your cheesecake batter.
Step 3: Prepare the Cheesecake Filling
In a large bowl, beat softened cream cheese with sugar until silky smooth with no lumps. This step is crucial for a flawless texture. Slowly add eggs one at a time, mixing gently on low speed to keep the batter light and prevent overmixing. Fold in lime zest, freshly squeezed lime juice, vanilla extract, and sour cream, which together infuse the batter with bright citrus notes and creamy tanginess.
Step 4: Assemble the Cupcakes
Divide the cheesecake filling evenly into the cooled crust-lined cups, filling each about three-quarters full for the perfect balance. Spoon a teaspoon of the blackberry sauce over each cheesecake cup. Using a toothpick, gently swirl the sauce into the batter to create a lovely marbled effect that’s as fun to look at as it is to eat.
Step 5: Bake the Cupcakes
Bake your beautifully assembled cupcakes for 18 to 20 minutes, or until the centers are mostly set but still carry a slight jiggle. This ensures a creamy texture rather than a dry one. Once out of the oven, crack the oven door open and let them cool in there for about an hour—it’s a gentle cooldown that prevents cracks. Finally, refrigerate the cupcakes for at least three hours or overnight to fully set the cheesecake.
Step 6: Garnish and Serve
Just before serving, add a dollop of whipped cream to each cupcake, top with a fresh blackberry, and sprinkle with extra lime zest for a fresh and colorful finish. These garnishes not only add to the visual appeal but also complement the layers of flavor beautifully.
How to Serve Blackberry Lime Cheesecake Cupcakes

Garnishes
For an elegant touch, a swirl of freshly whipped cream crowned with a juicy blackberry and a sprinkle of lime zest will elevate your cupcakes to dessert-table stardom. These fresh mementos hint at the flavors inside and provide a light, fluffy contrast to the dense cheesecake.
Side Dishes
Pair these cupcakes with a light, refreshing side such as a mint-infused fruit salad or a crisp glass of sparkling water with a lime wedge. These complementary sides balance the rich sweetness and keep your palate energized for each luscious bite.
Creative Ways to Present
For parties, arrange the Blackberry Lime Cheesecake Cupcakes on a tiered dessert stand surrounded by fresh blackberries and lime slices. Alternatively, serve them in individual clear cups for a sophisticated look that lets guests swoon over the swirls. Mini dessert forks and lime-colored napkins complete the celebration vibe.
Make Ahead and Storage
Storing Leftovers
Place any leftover cupcakes in an airtight container and refrigerate. They will stay fresh and flavorful for up to four days, making them a perfect make-ahead dessert for busy weeks. Just be sure to add garnish fresh before serving.
Freezing
If you want to keep them longer, these cheesecake cupcakes freeze wonderfully. Wrap each cupcake individually in plastic wrap and place them in a freezer-safe container. They freeze well for up to two months. Thaw them overnight in the fridge for best texture.
Reheating
Since these are cheesecake-based, reheating is not recommended as it can alter the texture. Enjoy them chilled straight from the fridge or at room temperature after briefly setting out for about 15 minutes to soften slightly.
FAQs
Can I use frozen blackberries instead of fresh?
Absolutely! Frozen blackberries work just as well. Just thaw them completely before cooking to help release their juices for the swirl, and drain any excess liquid if necessary.
What if I don’t have graham crackers for the crust?
You can substitute with digestive biscuits or even crushed vanilla wafers. The key is using a cookie base that’s slightly sweet and buttery to complement the cheesecake filling.
How do I prevent cracks in my cheesecake cupcakes?
Cooling the cupcakes slowly in the oven with the door ajar and avoiding overmixing the batter are two great ways to prevent cracks. Also, make sure not to overbake; the centers should be slightly jiggly when you take them out.
Can I make these cupcakes vegan or dairy-free?
Making cheesecakes vegan requires alternative ingredients like vegan cream cheese and egg replacers. While you can experiment, the texture and flavor might vary considerably from the original Blackberry Lime Cheesecake Cupcakes.
What’s the best way to serve these at a party?
Serve them chilled on a decorative platter with extra whipped cream, blackberries, and lime wedges. Offering small forks and napkins makes it easy and elegant for guests to enjoy.
Final Thoughts
These Blackberry Lime Cheesecake Cupcakes are a bright and beautiful way to celebrate simple ingredients transformed into something magical. Whether you’re baking for family, friends, or a special occasion, these cupcakes promise a burst of flavor and a texture that feels like a hug in dessert form. So, grab your ingredients, enjoy the process, and treat yourself to a bite of pure bliss—you won’t regret it!
PrintBlackberry Lime Cheesecake Cupcakes Recipe
These Blackberry Lime Cheesecake Cupcakes are a delightful fusion of creamy cheesecake with a tangy lime twist and a vibrant blackberry swirl, all nestled on a buttery graham cracker crust. Perfectly portioned for individual servings, these cupcakes offer a refreshing and elegant dessert ideal for gatherings or weekend treats.
- Prep Time: 25 minutes
- Cook Time: 25 minutes
- Total Time: 4 hours including chilling
- Yield: 12 cupcakes 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
For the Crust:
- 1 cup graham cracker crumbs
- 3 tablespoons granulated sugar
- 4 tablespoons unsalted butter, melted
For the Cheesecake Filling:
- 16 oz (2 blocks) cream cheese, softened
- ½ cup granulated sugar
- 2 large eggs, room temperature
- 2 teaspoons lime zest
- 2 tablespoons lime juice (freshly squeezed)
- ½ teaspoon vanilla extract
- ¼ cup sour cream
For the Blackberry Swirl:
- 1 cup fresh or frozen blackberries
- 2 tablespoons granulated sugar
- 1 teaspoon lemon juice
For Garnish (optional):
- Whipped cream
- Fresh blackberries
- Extra lime zest
Instructions
- Prepare the crust: Preheat your oven to 325°F (160°C) and line a 12-cup muffin tin with cupcake liners. In a small bowl, mix together the graham cracker crumbs, granulated sugar, and melted butter until combined. Press about a tablespoon of this mixture firmly into the bottom of each cupcake liner. Bake the crusts for 5 minutes, then remove and allow them to cool.
- Make the blackberry swirl: Place the blackberries, sugar, and lemon juice in a saucepan over medium heat. Cook, stirring occasionally, until the blackberries release their juices and the mixture thickens slightly, about 5 to 7 minutes. Strain the mixture through a fine sieve to remove seeds and let it cool completely.
- Prepare the cheesecake filling: In a large mixing bowl, beat the softened cream cheese with sugar until smooth and creamy. Add the eggs one at a time, mixing on low speed just until combined after each addition. Stir in the lime zest, lime juice, vanilla extract, and sour cream until the batter is smooth and creamy.
- Assemble the cupcakes: Evenly distribute the cheesecake batter into the prepared muffin liners, filling each about three-quarters full. Spoon one teaspoon of the cooled blackberry sauce on top of each filled liner. Using a toothpick, gently swirl the sauce into the cheesecake batter to create a marbled design.
- Bake: Bake the cupcakes for 18 to 20 minutes, or until the centers are set but still have a slight jiggle. Turn off the oven and leave the cupcakes inside with the door slightly open to cool for one hour. After that, refrigerate the cupcakes for at least 3 hours or overnight to set fully.
- Garnish and serve: Before serving, optionally top each cheesecake cupcake with a dollop of whipped cream, a fresh blackberry, and a sprinkle of lime zest for an extra pop of flavor and presentation.
Notes
- Use room temperature eggs and cream cheese to ensure a smooth cheesecake filling without lumps.
- Ensure you do not overbake the cupcakes; the slight jiggle in centers ensures creamy texture.
- Swirling the blackberry sauce gently prevents it from mixing completely, maintaining pretty marbling.
- For best flavor, refrigerate the cupcakes for at least 3 hours or overnight.
- These cupcakes can be stored in the refrigerator for up to 4 days.
- Freeze leftovers without garnish for up to one month; thaw in the refrigerator before serving.
Nutrition
- Serving Size: 1 cupcake
- Calories: 280 kcal
- Sugar: 18 g
- Sodium: 150 mg
- Fat: 18 g
- Saturated Fat: 10 g
- Unsaturated Fat: 7 g
- Trans Fat: 0.3 g
- Carbohydrates: 23 g
- Fiber: 2 g
- Protein: 5 g
- Cholesterol: 70 mg
Keywords: Blackberry Lime Cheesecake Cupcakes, Cheesecake Cupcakes, Berry Desserts, Lime Desserts, Graham Cracker Crust, Summer Desserts